caonetto

Can circlator work with an assembly with ambiguous bases?

1

Hi, I merged multiple nanopore contigs using illumina data but I have some ambiguous bases and Ns and some gaps in the final contig. I want to circularize this final...

Would be nice if the pipeline was optimised to work with compressed files.

Fully supported CRISPR edit not detected.

6

Hi, I have a known homozygous deletion made using CRISPR which is not getting detected by sniffles 2.2 due to "STDEV_POS" The sample is super high coverage with 416 reads...

question on split pairs

3

When running split pairs on pod5s and the basecalled sam, duplex tools generates a new folder with split pod5 files and associated read ids. Does this folder contain all the...

Hi, Ive been trying to use poretools however I cannot get it to work in a recursive way in windows. Any ideas?

Links summary

1

Is it possible to obtain a summary tsv file showing the number of links between each 2 contigs? Thanks.

define length of each chr

1

Hi, Thanks for the package!. Is there a way to define the length of each Chr so that two manhattan plots can be compared to each other with the same...

ModuleNotFoundError: No module named 'scripts_of'

1

Hi, Im trying to use the create_files_for_hogs.py script to get the OGs fastas from the N0s but I am getting the following error. ` from scripts_of import util, trees_msa, orthologues,...

html output option not available in v 0.3.3?

2

Hi, How can we generate the html report ouput that used to be available using the -o option in histgrowth? Cheers.