Camilla Ceccarani

icon indicating a website link https://www.itb.cnr.it/en/institute/staff/camillaceccarani/

icon company CNR icon location Milan, Italy icon location Bioinformatician curious about the microbiome world

Results 5 comments of Camilla Ceccarani

Subset genes in the initial steps

Wow that was quick! Thank you so much. How about selecting genes from the ratio mutation / length? I know this would be MutSig material, but is there a way...

Subset genes in the initial steps

I see. Is there some point in the pipeline where I can find the genes length, so I can manually do the ratio and then subset? Thank you again!

Genome Build Compatibility Issues

Same here, I'm getting `[faidx] Failed to fetch sequence in chr10` with all downloaded fastas, either NCBI or VEP or USCS Has someone found a solution??

after run_lefse, plot_cladogram error

Same issue here after one year from yours, I agree with BlueK77 as I get the error only in the overall lefse output but not from the marker subset...

Installation issues with Rfast

Thank you for the fast and kind answer, I "solved" the issue by upgrading my OS to Ubuntu 22.04... after that, the installation has been a piece of cake