cakeinspace

Results 8 issues of cakeinspace

Hey thanks for the wonderful library. I am also looking into vtk but the documentation and the examples seem really opaque. I was wondering if the marching cubes algorithm in...

Hey I was wondering if the PSE metric is available through AntsPy. I was looking at the ants.registration.interface file and it seems to be calling antsRegistration. The manual page for...

Currently when we draw labels for segmentation we can use either the polygon selection tool or the paintbrush tool. It would be cool to have a bspline selection tool where...

The muscat bioconductor page says that ![Screenshot 2023-12-28 at 14 46 32](https://github.com/HelenaLC/muscat/assets/16275532/c3abb8fc-2727-418d-a91e-c3222f51b71d) Where $\lambda_c$ is a cell dependent parameter. Now for each cell that we simulate the sim_mean for a...

### Request type Extension of existing module ### Request description Same as title ### Example command _No response_ ### Example return value _No response_

enhancement

My understanding is that dyngen generates count table by simulating a GRN. Usually when we measure counts from a scRNA-seq experiment. That has a poisson sample of the underlying counts...

Hey thanks for your code. I want to run the logp1 method on my dataset. I am doing it by running `--transformation logp1` and `--alpha TRUE`. Are these two commands...

Thanks for creating this wonderful package. I have been using it and its really amazing. I especially like the tree layout algorithms. Other than reading the source code and trying...