Zhangbin Cai

no reads generated after running extract_kraken_reads.py

2

Hi there, I am trying to use extract_kraken_reads.py to exclude the human reads. I have kraken output file kraken.report.txt and kneaddata processed fastq file other_kneaddata.fastq as inputs: ~/KrakenTools/extract_kraken_reads.py -k kraken.report.txt...

calculation issue java.io.IOException: Cannot delete file: /tmp/ezaai/78e2b9bcc9dd8cf6_tmp/8191412700641163904

1

Hi developers, I ran the program but got this error. [MAR 15 12:15:10] EzAAI |: EzAAI - v1.2.3 [Feb. 2024] [MAR 15 12:15:20] EzAAI |: Calculating AAI... [Task 1/484] org.apache.commons.io.IOExceptionList:...

EXCEPTION: Bio::Root::Exception

3

I installed the software through CPAN I tried to run the software with: mashtree *.fasta --numcpus 12 --min-depth 0 > mashtree.dnd while I always got this error: ------------- EXCEPTION: Bio::Root::Exception...