calculation issue java.io.IOException: Cannot delete file: /tmp/ezaai/78e2b9bcc9dd8cf6_tmp/8191412700641163904

[caizhangbin]

Hi developers, I ran the program but got this error. [MAR 15 12:15:10] EzAAI |: EzAAI - v1.2.3 [Feb. 2024] [MAR 15 12:15:20] EzAAI |: Calculating AAI... [Task 1/484] org.apache.commons.io.IOExceptionList: /tmp/ezaai/78e2b9bcc9dd8cf6_tmp at org.apache.commons.io.FileUtils.cleanDirectory(FileUtils.java:331) at org.apache.commons.io.FileUtils.deleteDirectory(FileUtils.java:1192) at leb.process.ProcCalcPairwiseAAI.pairwiseMmseqs(ProcCalcPairwiseAAI.java:399) at leb.process.ProcCalcPairwiseAAI.calculateProteomePairWithDetails(ProcCalcPairwiseAAI.java:67) at leb.main.EzAAI.runCalculate(EzAAI.java:511) at leb.main.EzAAI.run(EzAAI.java:689) at leb.main.EzAAI.main(EzAAI.java:725) Caused by: java.io.IOException: Cannot delete file: /tmp/ezaai/78e2b9bcc9dd8cf6_tmp/8191412700641163904 at org.apache.commons.io.FileUtils.forceDelete(FileUtils.java:1344) at org.apache.commons.io.FileUtils.cleanDirectory(FileUtils.java:324) ... 6 more Caused by: java.nio.file.AccessDeniedException: /tmp/ezaai/78e2b9bcc9dd8cf6_tmp/8191412700641163904/pref_0.dbtype at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:90) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:106) at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111) at java.base/sun.nio.fs.UnixFileSystemProvider.implDelete(UnixFileSystemProvider.java:291) at java.base/sun.nio.fs.AbstractFileSystemProvider.deleteIfExists(AbstractFileSystemProvider.java:109) at java.base/java.nio.file.Files.deleteIfExists(Files.java:1191) at org.apache.commons.io.file.DeletingPathVisitor.visitFile(DeletingPathVisitor.java:161) at org.apache.commons.io.file.DeletingPathVisitor.visitFile(DeletingPathVisitor.java:37) at java.base/java.nio.file.Files.walkFileTree(Files.java:2786) at java.base/java.nio.file.Files.walkFileTree(Files.java:2857) at org.apache.commons.io.file.PathUtils.visitFileTree(PathUtils.java:971) at org.apache.commons.io.file.PathUtils.deleteDirectory(PathUtils.java:434) at org.apache.commons.io.file.PathUtils.delete(PathUtils.java:391) at org.apache.commons.io.FileUtils.forceDelete(FileUtils.java:1341) ... 7 more [MAR 15 12:15:24] ERROR |: Program terminated with error.

Any suggestions?

[endixk]

Hi, it seems like a duplicate issue with #21.

Please refer to the solution I wrote there: https://github.com/endixk/ezaai/issues/21#issuecomment-1989971561