Cade Mirchandani
Cade Mirchandani
I have constructed graphs previously without encountering this issue. Any ideas or solutions? Thanks in advance. My command looks like this: `vg construct -r ref.fna -v sample.vcf.gz > sample.vg` And...
**Snakemake version** `7.12` **Describe the bug** When executing a workflow using the `--configfile` and `--google-lifesciences`, Snakemake uses the absolute path of the config file specified when running the cloud jobs....
Trying to install the latest pyd4 release: `pip install pyd4` Get this: (full error trace attached) [pyd4_pip_err.txt](https://github.com/38/d4-format/files/12822146/pyd4_pip_err.txt) ``` Some errors have detailed explanations: E0405, E0412, E0425, E0463, E0531. error: could...
Seems like a duplicate of #404 I am trying to run the viral workflow from the [docs](https://miniwdl.readthedocs.io/en/latest/getting_started.html#getting-started). However the workflow is failing with this error `post-task chown failed: {'Error': None,...
Hi, I am trying to use gos to visualize a local bed file exactly like the OP in #120 and am also having trouble. I am working on a python...
### Description @johanneskoester, just wanted to start the discussion on adding the monitoring plugin interface. I've implemented a monitoring plugin interface [in this repo](https://github.com/cademirch/snakemake-interface-monitoring-plugins). In this PR I've replaced the...
### Description Removes seemingly extra call to setup_logger() in api, see #2797 for details. Still not super familiar with API changes, so @johanneskoester please advise. ### QC * [x] The...
This adds the feature requested in #81 by @Jakob37. I tried my best to emulate the existing code in `stat`, but would of course appreciate any feedback. Not sure if...
Followup to #2830. This PR attempts to make Snakemake's logging more modular to make room for a potential logging plugin interface, or other logging/monitoring additions, as well as make logging...
hi @brentp sorry i'm back again - I just noticed this when my per-base d4 files were way bigger than expected I think this is the right fix? I haven't...