Cade Mirchandani

@rcaneill Take a look at how [this repo](https://github.com/snakemake-workflows/dna-seq-gatk-variant-calling) has setup github actions. I've emulated this with my own workflows and have had success.

I also do have issues with DAG build times for large workflows. I'm not sure how feasible multi threading the DAG computation is. The batch option does exist, however in...

@johanneskoester Do you have any thoughts on this issue? Large DAG build times are becoming an issue for my group's use. I'd be happy to contribute to this - just...

Still an issue on 7.12.

Hm, I've been using GS remote recently without issue. In your example you prepend the input and output files with `prefix`, which is the same prefix you provide in the...

Nice workaround @drneavin! Thanks for sharing this. When I get a chance I'll work on a fix and open a PR. I think I've found the line that causes the...

In Snakemake 7.xx you should use the `--slurm` option in favor of the cluster profile. See here for relevant docs: https://snakemake.readthedocs.io/en/v7.32.3/executing/cluster.html#executing-on-slurm-clusters In Snakemake 8.xx you should use the executor plugin...

I've just run into this in my own workflow as I was migrating to Snakemake 8. Have you made any progress in debugging this? Thanks for making a minimal example,...

Input functions are expected to take specific arguments such as `wildcards`. See the [docs](https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#snakefiles-input-functions) for more info and an example.

@johanneskoester could you take a look at this when you get a chance? Would be good to get this fixed before moving forward with monitoring plugin.