Frank Burbrink

Installing gadma on Macs with the M1 chip

13

Hello, I was wondering if anyone has successfully installed gadma on a mac with an M1 (or M1 Ultra) chip? I have had no luck even after creating an conda...

DNAbin2genind and ambiguity codes from Fasta

1

Hello, It seems that when I read fasta files with ambiguity codes for heterozygous states (e.g., w = A/T) using DNAbin2genind this is coded as NA in the genind object....

Estimating substitution rates

2

Hey Guys, Does treePL generate substitution rates that can be viewed somewhere? I see what looks like these rates as edge lengths in .r8s files, but I am just not...

Illegal instruction 4 errors when running the example

3

Hello, I am running ReLERNN on a mac with an M1 chip and suspect that this might be the main cause of the following error when running the example file....

Gamma values > 1.0 and negative Z scores

2

Hello, I have concatenated a Rad dataset for 100 individuals between two populations with an outgroup for >200,000 bps (not just snps). I placed all individuals with ancestral coefficients from...

Hello, Is ti possible to calculate the amount of missing data per window along with the standard stats (fst, dxy pi) in that window so we can know if we...