Frank Burbrink

Hi Ekaterina, Thanks for you help. I am still having an issue on my M1. Any help would be appreciated. It looks like moments 2.0 installed ok and the gadma...

So, there is "No module named import allele." However, I have scikit-allel 1.3.7 successfully installed in my conda environment. I generally make the VCF files outside of gadma using the...

I am still working on this and getting errors: Traceback (most recent call last): File "/Users/frankburbrink/mambaforge/envs/GADMA_RosettaX/bin/gadma", line 5, in from gadma.core import main File "/Users/frankburbrink/mambaforge/envs/GADMA_RosettaX/lib/python3.8/site-packages/gadma/__init__.py", line 94, in from .engines...

Hmmm...it doesn't seem like it will work with python3.9 or 3.10. See the errors (first is cloned and pip install ., second is a conda install): error: subprocess-exited-with-error × python...

I created a conda environment with python==3.10 and did the gadma pip install but the test keeps failing. I can easily run this on my cluster and other sources, but...

This was for a conda install, which was a bit difficult (msprime wheel issues). However, I did eventually get a clean Conda install.__________________________________Frank T. Burbrink, Ph.D.Chair, Division of Vertebrate ZoologyCurator-in-ChargeDepartment...

Hi Paul, Thanks for the email. Ok, I will try the bootstrapping procedure then. I only have 4K snps here, so I’ll take it all with a grain of salt....

Following up on Kyle's question, I see that even with phased data it looks like you are still requiring the number of individuals is double what they actually are when...

I haven't thought out how HyDe would handle that computational and translate that into an estimate of the amount of admixture, but typically in other software (e.g., Structure,SMNF, TESS3r etc.)...