Ben Wulf

Hi guys, I used the following command to call fastp: ```bash fastp -i reads/XXXXXXXXXXX_S81_L001_R1_001.fastq.gz -I reads/XXXXXXXXXXX_S81_L001_R2_001.fastq.gz -o R1.fastq.gz -O R2.fastq.gz --cut_right -M 30 --cut_right_window_size 1 -w 10 ``` I would...

Documentation for applying sarek to nf-core test data

2

Hi, I have some serious problems to apply sarek to the nf-core test data. I am searching for the specific nextflow call that generates the sarek outputs of the test...