Pengzhi Zhang

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icon company Houston Methodist icon location Houston icon location I study physics of bio-systems with theory and computational tools.

Results 3 comments of Pengzhi Zhang

How to get isoform counts for single cell RNA-seq data?

Thank you for your quick reply, Yenaled! I was testing this on the forebrain glutamatergic neuronal lineage data in the KBtools tutorial. The kb count tcc matrix (394,494 x 6,238,208)...

run_ora using adata as the input

> Hi @biopzhang , > > Thanks for finding this out! Indeed it should, but its going to be hard to refactor the code to accommodate this. I'll keep it...

error of cd.pseudo_time()

Hi Mia and Jacqui, Thanks for your interest in cellDancer! This error usually occurs when multiple lineages exist, and there is insufficient overlap between them in the embedding space used...