Bernardo Aguzzoli Heberle

Results 3 issues of Bernardo Aguzzoli Heberle

How does bambu handle secondary/supplementary alignmets, low MAPQ, and MAPQ=0 (reads that align equally well to 2+ loci)?

Hello, I was wondering how Bambu handles these three alignment cases: 1. Secondary and Supplementary alignments in a bam file? Does Bambu do anything with those or just ignores them?...

Is it possible to get transcript coverage estimates from Bambu?

1 comment

Hi, I am working on a project where it would be helpful to have coverage estimates for transcripts. I know that counts should theoretically be a good estimate of coverage...

enhancement

PycoQC fails when fastq is trimmed using Pychopper.

Hello, PycoQC exits with an error when I use it in with a bam file generated from a fastq file that was trimmed using Pychopper. When I do not use...