Bernardo Aguzzoli Heberle comments

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                                            Bernardo Aguzzoli Heberle

--mix with -e loses guide transcripts

Hi, I am curious about the progress on this issue. I am running the following command on StringTie and getting the same kind of problem where many of the transcripts...

Large numebr of BAM files leads to Error in `vec_interleave_indices()`:

Hello @cying111, I’m encountering the same problem with a large dataset. Each of my samples was pre-processed into separate RDS files using Bambu v3.5.1 (quantification=FALSE, discovery=FALSE). Before attempting to run...

Large numebr of BAM files leads to Error in `vec_interleave_indices()`:

Thank you for your reply, @cying111. I tried using the `patch_bigsamples` branch, but Bambu still exits with an error when I run my large dataset. The error is no longer...

Large numebr of BAM files leads to Error in `vec_interleave_indices()`:

Hi @cying111, Thank you for the thoughtful reply, I really appreciate your help! I tried the approach you suggested (or at least I think I followed your instructions correctly), but...

Large numebr of BAM files leads to Error in `vec_interleave_indices()`:

Brilliant! The code now runs successfully. Thank you very much for the support and quick replies. I have one small observation: it seems that setting trackReads = FALSE during the...