Ola Tarkowska

Error in 0:(rowTiles - 1) : NA/NaN argument

1

Following example in https://gist.github.com/tractatus/306a62f091a8c3562f5bc3e5db9a41e5 I am facing issue with stiching function, more precicly `get.grid.coordinates` throws `Error in 0:(rowTiles - 1) : NA/NaN argument`.

Manage services from the omero settings

1

It woudl be great to be able to manage services (whether they are on or off) configurable from omero settings, so for example I could turn off pyramid generation if...

Invalid directory specified for file system service

5

Looks like this old bug https://github.com/ome/openmicroscopy/issues/1185 is still present some how ``` Caused by: java.lang.IllegalArgumentException: Invalid directory specified for file system service. /nfs/omero/idr-repo/omero-server ```

After successful changes in https://github.com/openmicroscopy/snoopycrimecop/pull/215 jobs could apply filters on startup. This should be configurable (ideally from playbook)

``` ("error in call","Traceback (most recent call last): File "/home/omero/workspace/OMERO-web/OMERO.web/lib/python/omeroweb/webgateway/views.py", line 1218, in wrap rv = f(request, *args, **kwargs) File "/home/omero/workspace/OMERO-web/OMERO.web/lib/python/omeroweb/webgateway/views.py", line 2521, in object_table_query tableData = _table_query(request, fileId, conn,...

New container using https://hub.docker.com/r/openmicroscopy/apacheds/

incorrect UUID of tiled image

1

Tiling images using bfconvert: ``` bfconvert /tmp/source.tif /tmp/test/prefix_X%xY%y_Z%z_T%t_C%c.ome.tiff -tilex 1024 -tiley 1024 -option ometiff.companion prefix.companion.ome ``` generate incorrect UUID ``` $ showinf /tmp/test/prefix_X5Y5_Z0_T0_C0.ome.tiff ... Failure during the reader initialization loci.formats.FormatException:...

missing slider

1

When you open multiple images in one viewer, slider is gone from the first one. To reproduce, double click on the second image in the same dataset

infrastructure needs to support different OSes

2

At the moment this repo only support CentOS7, what about Ubuntu and http://docs.ansible.com/ansible/apt_module.html? How this will be organized to support the same tasks for different OS? Do we need extra...

sudo: sorry, you must have a tty to run sudo

4

see https://github.com/openmicroscopy/infrastructure/pull/112#issuecomment-246352638 ``` TASK [upgrade-distpackages : system packages | upgrade] ************************ task path: /Users/ola/OMERO/SYSADMIN/infrastructure/ansible/roles/upgrade-distpackages/tasks/main.yml:4 Monday 12 September 2016 14:46:05 +0100 (0:00:00.363) 0:00:00.403 ****** failed: [10.0.51.143] (item=[u'*']) => {"failed": true, "item":...