Asif Adil comments

Results 8 comments of


                                            Asif Adil

Fit on array of size >= 4096 returns _TracedPicklingError: Failed in nopython mode pipeline (step: nopython mode backend)

Hi, I am facing this issue in pyspark environment using jupyter notebook. Any dataframe lesser than 4000 rows is working fine but as soon as the number increases this error...

Fit on array of size >= 4096 returns _TracedPicklingError: Failed in nopython mode pipeline (step: nopython mode backend)

> Just copy-paste below the module's imports. It is working like charm now. 😁 Thank you so much @oscarorti tried it on 5k pbmc for now, will keep the community...

group name error

Hi! The `progression_group` expects a factor value. You have to change the numeric or character valued column/group of your metadata as factor. Like following: # Get the Group type from...

group name error

before converting your control group to a factor, it has to be taken as a vector. try this: `control_group

extract_modules() on larger objects

I am facing the same problem, did you find a solution for this?

Error in array(ans, c(len.a%/%d2, d.ans), if (!is.null(names(dn.ans)) || : negative length vectors are not allowed

Hi Lucy! I am also facing the same problem, did you find a solution to this problem? I would be grateful for any help. Thanks! Best, Asif

Running gp.enrich() with custom gene_sets throwing error.

Hi @zqfang, thank you for your prompt reply. I am using the latest `version 1.1.3`. It is running fine if I run `gseapy.enrichr()` with gene_sets from `gseapy.get_library_name()`. But I was...

'notebook not found from uri'

Reporting the same issue. I tried updating the extension it did not work. Kindly resolve!