Abigail Lind

Unexpected distribution of insert sizes from paired-end HiSeq simulation

1

I am simulating paired-end HiSeq reads from a single genome, and the insert sizes of the simulated reads are very different from what is expected from a HiSeq run. The...

Restricting introns to RNA seq support

1

Hi, is it possible to stringently require all introns considered by braker to have support in the RNA-seq data provided? I am finding that braker is adding a lot of...

Provide stringtie output directly to braker3

3

Hi, I'm working with an organism that has very short intergenic lengths. We can use stringtie for transcript assembly, but it often merges two genes together because of the short...