Abigail Lind

Thanks for your interest in eukdetect and for reaching out. It looks like this error can happen when ```environment.yml``` isn't in visible to conda. Can you double check that the...

Eukdetect doesn't calculate relative abundance of taxa. One reason for this is that most metagenomic sequencing libraries are primarily composed of bacterial reads - and as eukdetect only considers eukaryotes,...

If this is something that you want to create, you can estimate the relative abundance from the "Total_marker_coverage" number that eukdetect reports in the table output. This number is the...

Hi, there's a new release of eukdetect that may help you with these questions. The new release calculates a proxy for relative abundance called "eukaryotic fraction". Since eukaryotes usually make...

You should be able to fix this by removing all files in ```.snakemake/locks/```. Leaving this issue open so I will add this option in eukdetect in future.

Thanks for the update. Just to be clear, you get an error reporting that the database is empty, but the issue is that your read files don't contain reads longer...

At the moment, that requires separate config files if you have reads from different library lengths. One option if you want to consider this a single sample would be to...

Hi Rio, Thanks for reaching out. I wonder if something went awry with installation and snakemake didn't install properly. If you run "which snakemake" from within the eukdetect environment, do...

Hi Rio, I just want to double check with you - have you followed all the setup instructions on the EukDetect installation portion of the readme? That includes everything in...

Hi Rio, Thanks for bringing to my attention that this instruction wasn't clear. I've added some clarification to the readme. I tried in a few different settings to replicate your...