Alex Crits-Christoph

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icon location Baltimore, MD icon location Making open source tools for microbiology

Results 2 issues of Alex Crits-Christoph

--contig-end-exclusion doesn't work with -m not set to mean

2 comment

Hi Ben - big fan / user of coverM here. Recently I uncovered this issue with v0.6.1: When I run ```coverm contig --contig-end-exclusion 1000 --bam-files ./test/*.bam --output-format sparse -o test1.tsv...

Chain names have a max length of 5

When I have a chain ID longer than 5 characters I get: ``` File "/usr/local/lib/python3.11/dist-packages/boltz/main.py", line 613, in predict process_inputs( File "/usr/local/lib/python3.11/dist-packages/lightning_utilities/core/rank_zero.py", line 42, in wrapped_fn return fn(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^...