Alex Crits-Christoph
Alex Crits-Christoph
:+1: to paired-ends... I currently am engaged in a 1 man boycott against all programs that don't utilize all paired read information on principle but really do want to try...
Cool, we read in with pileup too and just create a lookup table for each read name, and because pairs share names pair information gets combined efficiently. We also work...
Hi Ben, So, I see this issue with `-m covered_bases` and `-m covered_fraction` in my data as well, do you see that as well? I'm actually not sure I follow...
Hi Daniel, This would be pretty unusual. I have seen R2 of >0.95 in correlation between pi and number of SNVs. Can you share some graphs of your data?