Aida Andrades Valtueña
Aida Andrades Valtueña
Hi, I also had the same error running nf-core/eager and affecting MALT, in this case there was one sample with 0 reads assigned. The error looks like this: ``` MultiQC...
@ewels sorry it took so long to reply. It makes sense. I have now create a new issue: #1683
Added Endorspy in PR #961 Needs to be updated when qualimap option is added in endorspy
Working on the hostremoval section
Yes, BEDTOOLS_COVERAGE should run on raw merged ones since the user may want to run those with mapping quality 0, which will not be appropriate for genotyping.
For Uberon: - [ ] osteocrust (see McDonough 2018 10.1093/jmammal/gyy080)
> Is this actually correct? `--s` comes under the 'multiple libraries' section, where my understanding of the implementation of this module is that it only ever accepts a single library...
Hi @SPPearce, I just returned from maternity leave, I will try to get to this within the next month.
I donor have the time to work on this one right now. I will reopen it when I have the time. Thank you for asking.
Hi @JoshuaDanielRubin! We are working on integrating haplocart in eager3 and I will be finishing up the module