Alexandre Bureau

icon indicating a website link https://cervo.ulaval.ca/pages_perso_chercheurs/bureau_a/index.html icon indicating an email [email protected]

icon company Université Laval icon location Québec icon location Researcher in statistical genetics at the CERVO Brain Research Centre and professor in the Department of Social and Preventive Medicine at Université Laval.

Results 3 comments of Alexandre Bureau

Support internal samples in simulation through pedigree

This functionality to sample subjects internal to the pedigree would be very useful to research I am conducting on probabilities of rare variant sharing by related individuals. I hope this...

Support internal samples in simulation through pedigree

I would be happy to test the implementation, but I do not master msprime to the point to code a new feature.

Test_pedigree.py with internal samples

I continue here the discussion of [the closed pull request](https://github.com/tskit-dev/msprime/pull/2325). I inserted the command tables.dump("test_shallow_internal.ts") at line 564 of test_pedigree.py. Then I called python3 algorithms.py --from-ts test_shallow_internal.ts 4 test.ts and...