Zheludev

icon indicating a website link https://orcid.org/0000-0002-9572-0574

icon location Postdoc at the Gladstone Institute of Virology - mostly focusing on strange RNA elements and viruses

Results 3 issues of Zheludev

RoseTTAFold2NA?

2 comment

are there any colab notebooks around for running [RoseTTAFold2NA](https://github.com/uw-ipd/RoseTTAFold2NA)? ColabFold has been game-changer for me, I'd love to be able to try out RF2NA too.. Otherwise, does anybody have proteins...

add HROM (and questions re: HROM's findings)

3 comment

Hi `Meteor`, a recent study has built a more comprehensive oral microbiome database - the [Human Reference Oral Microbiome (HROM)](https://www.cell.com/cell-host-microbe/fulltext/S1931-3128(25)00415-9#author-highlights-abstract) - all their metagenomes (and `Metaphlan` database) are [available online](https://www.decodebiome.org/HROM/listdir.php?directory=data/genome_catalog)....

Running on disk vs in RAM?

Hi all, kmdiff is great! I'd love to run it on larger datasets but keep getting crashes, I assume because it's trying to run in RAM? Is there a way...