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Error: Cant access file -­a

2

Hi, I'd like to extract the core genes for each sample with the following command `query_pan_genome ­a intersection ­g clustered_proteins *.gff` However, I got the error - _Error: Cant access...

Hi, I would like to adopt the predefined search space from the package `mlr3tuningspaces`, but I have no idea how to implant it into the benchmarking module. My script is...

QUAST failed! Make sure you are using the latest version of QUAST

2

Hi, I installed AGB using bioconda according to your tutorial, but I consistently got the following error: > Parsing ../H13_4/assembly_graph_with_scaffolds.gfa... Finish parsing. Extracting edge sequences from ../H13_4/assembly_graph_with_scaffolds.gfa... Running QUAST... No...

how to select the read length when building bracken database

5

Hi, I am quite confused about the read length when building the bracken database. What if, after removing the adapter, the average read lengths of different samples are different? How...

I understand the `arboreto` is designed for single-cell RNA-Seq, but how about the bulk RNAS-Seq data? If I apply `arboreto` to bulk RNA-Seq data set, is the result credible? Also,...

need larger value of 'ncol' as pivoting occurred

10

Hi, I used `adonis2` with the following code `adonis2(df_pathway_f~., bgc_exp_f, permutations = 999, distance = 'bray', by = "margin")` But I got the error `need larger value of 'ncol' as...