WWz33

更新到了最新的源码

Python3.10 issue: ImportError: cannot import name 'Mapping' from 'collections'

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Traceback (most recent call last): File "/usr/local/bin/run_sepp.py", line 4, in __import__('pkg_resources').run_script('sepp==4.5.1', 'run_sepp.py') File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 656, in run_script self.require(requires)[0].run_script(script_name, ns) File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1453, in run_script exec(code, namespace, namespace) File...

编译PHYLIPNEW-3.69.650报错

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/usr/bin/ld: disc.o:(.bss+0x38): multiple definition of `phylostates'; clique.o:(.bss+0x4a0): first defined here /usr/bin/ld: phylip.o:(.bss+0x50): multiple definition of `embossouttree'; clique.o:(.bss+0xf8): first defined here /usr/bin/ld: phylip.o:(.bss+0x68): multiple definition of `embossoutfile'; clique.o:(.bss+0x100): first defined here...

Hi ksamuk! Can pixy use csi index ? tbi does not support large vcf files ,thanks. [issue](https://github.com/samtools/bcftools/issues/1452#issue-840577336) best!

Hi！ I get this error after compiling： `./target/release/aligned_bam_to_cpg_scores --pileup-mode model --bam ../test.bam ` > [2025-09-15][22:08:09][aligned_bam_to_cpg_scores][ERROR] Invalid command-line setting: The model pileup mode has been specified without enabling the corresponding tflite...

Hi,duke! When I found that this gene has only one exon, the extraction results were inconsistent with gffread. Can you tell me the reason? Thank you very much. [ZN6.T2T.gene.agat.log](https://github.com/user-attachments/files/23152875/ZN6.T2T.gene.agat.log) [agat_err.txt](https://github.com/user-attachments/files/23152876/agat_err.txt)...

Failed with exit code 1. (rc=256)

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Hi, canu Team! Canu process terminated unexpectedly. Can you help me? ``` #!/bin/bash #SBATCH -o %x.%j.out #SBATCH -p soy-com #SBATCH -J canu #SBATCH -c 90 canu -d lm_canu_assembly -p lm_canu...