编译PHYLIPNEW-3.69.650报错

[WWz33]

/usr/bin/ld: disc.o:(.bss+0x38): multiple definition of phylostates'; clique.o:(.bss+0x4a0): first defined here /usr/bin/ld: phylip.o:(.bss+0x50): multiple definition of embossouttree'; clique.o:(.bss+0xf8): first defined here /usr/bin/ld: phylip.o:(.bss+0x68): multiple definition of `embossoutfile'; clique.o:(.bss+0x100): first defined here collect2: error: ld returned 1 exit status make[2]: *** [Makefile:1078: fclique] Error 1 make[2]: Leaving directory '/home/ww/biosoft/PHYLIPNEW-3.69.650/src' make[1]: *** [Makefile:981: all] Error 2 make[1]: Leaving directory '/home/ww/biosoft/PHYLIPNEW-3.69.650/src' make: *** [Makefile:351: all-recursive] Error 1 这个方法可以解决https://www.jianshu.com/p/8205095e50cd

[hewm2008]

你好 ，这软件是第三方的，安装麻烦。 实在麻烦，建议直接用下面这两个网址，上传数据 几分钟就出结果

Choose one of A/B A. Upload the web fneighbor(http://emboss.toulouse.inra.fr/cgi-bin/emboss/fneighbor?_pref_hide_optional=1) ，the Click the Run fneighbor bottom . then you can get the output file datafile.treefile B. Upload the p_dis.mat to the website fastme (http://www.atgc-montpellier.fr/fastme/), select Data Type to the Distance matrix ,Click the bottom twist execute & email results. you will get the p_dis_mat_fastme-tree.nwk , and Email not mandatory;

[timizeng]

Thanks for the wonderful illustration: I would like to suggest installing this by Conda/mamba, like mamba install -c bioconda embassy-phylip which will contain the tools that all need. cheers!

[hewm2008]

1.52版本 更快计算 同时调用新的构树方法 一步到位。