Vitaly Korchagin

I have the same error after which _fastp_ halt without output. ``` vk@GenomeBiology ~/work/Experiment/dval $ fastp -i /Seq/5_38_1.fastq.gz -I /Seq/5_38_2.fastq.gz -o out.R1.fq.gz -O out.R2.fq.gz -w 16 ERROR: sequence and quality...

> > I have the same error after which _fastp_ halt without output. > > ``` > > vk@GenomeBiology ~/work/Experiment/dval > > $ fastp -i /Seq/5_38_1.fastq.gz -I /Seq/5_38_2.fastq.gz -o out.R1.fq.gz...

Same error`s at Step 2. BLASR version 5.3.2. ``` [vk@GenomeBiology work]$ python ~/distr/halc/runHALC.py d_PB.fa short_reads_A.fasta -t 22 -r 2018-11-02 16:26:58.353467 /////STEP 1 STARTED////////////////////////////////////////////////////////////////////////////////////////////////// Running command: Chunker -s 200M -o ./temp/step1/pb-%03d.fa...

Hi, Is there any solution for this problem?

Three years have passed and there is no issue to this problem.

Hi! `seroba createDBs database/ 71` many ignored sequences in ariba output and "no such file" warnings. [total.log](https://github.com/sanger-pathogens/seroba/files/3974027/total.log) For example ariba_db folder contain such files: [DB_part.zip](https://github.com/sanger-pathogens/seroba/files/3974045/DB_part.zip)