Vadim (Dani) Dubinsky

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icon company Tel-Aviv University icon location Israel, Tel-Aviv icon location PhD alumni from Tel-Aviv University. Bioinformatician and Data Scientist with expertise in microbiomes, clinical and genomic data, algorithms and AI.

Results 3 issues of Vadim (Dani) Dubinsky

"Variant is not consistent: U00096.3:965-968 - TGCT(REF) vs (FASTA)" error

11 comment

Hello @tseemann and all users, I am running snippy with basic configurations and keep getting the following error (even when change the reference from FASTA to GenBank): [variant_manip.cpp:75 is_ref_consistent] Variant...

bug

Strain tarcking and "marker alleles"

1 comment

Dear developers/users, I have a question regarding the strain_tracking script and concept: From what I understand from the documentation and from the paper, the 1st step is to identify rare...

Support for GFA graph format?

Hello Is there any chance to add support for GFA graph format? Currently as I understand Recycler only works with FASTG format New tools like Unicycler (basically a Spades assembler...