Vadim (Dani) Dubinsky

Hi everyone, I have downloaded and built the db with version 0.5.5, and it went OK after adjusting the hash with Jellyfish. Here are the exact commands I have used:...

Hi Sabstian, This is a good question! I also would like to know why to use KrakenUniq over Kraken2? Regarding Bracken, I asked the author of Bracken same question yesterday,...

Hi @fbreitwieser, Thank you very much for your answer! I was actually planning to ask you what is a good threshold to filter based on unique k-mer counts... :-) I...

Hi @fengyuchengdu Thanks for your replay. So I understand that you did use snippy before, on the same data? and never got this error? maybe there was some version changes...

Hi @eam12 I was managed to fix this error thanks to the solution by @ktmeaton from issue #410 (by downgrading dependency [vt]) - look there.

I also encountered the same error. I have installed PlasFlow as instructed using Conda (Python 3.5 etc') but missed one step (_Mac users should install Tensorflow at this step..._ -...

Thank you for the great tool you have developed. Running in parallel many instances of gapseq for many genomes is of course a good option to speed things up. But...