V-Catherine

[E::bwa_idx_load_from_disk] fail to locate the index files

10

Hello Jeremiah, I have an error while trying to run SvABA, similar to the one Tiffany had but that does not seem to be linked. I have run the following...

Bed file format

1

My bed file with its one-line header made abra2 crash with the following error: Loading target regions from : target.bed Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1 at abra.RegionLoader.load(RegionLoader.java:49) at abra.ReAligner.getRegions(ReAligner.java:1347)...

Hi, The single-end fastq mode works only with v2.4 using the option "--suffix2 null" but does not work with input_file having column pair2 = NO_fastq2 or = null.

It would be interesting to be able to input only one single fastq (no paired fastqs)

Hello, I did not find how to specify the alignment of the general caption using ggcoxzph function. Mine is on several lines and I would like to have the caption...