Anthony Bertagnolli

greetings @lvclark, i'm a bit new to phyloseq, was wondering if you could describe the code/function you developed to get a 3-ordination and subsequent plot out for phyloseq.

thanks, much appreciated. One question, it doesn't seem to handle the output of nmds_unifrac from above: beta_diversity_3d(nmds_unifrac) Error in data.frame(x$points[, 1:3], metadata[, color.column], Label = rownames(x$points)) : argument "metadata" is...

greetings, was just wondering if there was any way to plot these directly to a pdf file. I run all the commands and get the 'index.html' files to plot, then...