TKsh6
TKsh6
Here is my command, `DRAM-setup.py prepare_databases --output_dir DRAM` And this is de report error, ``` /beegfs/home/syl/anaconda3/envs/vs2/lib/python3.10/site-packages/mag_annotator/database_handler.py:166: UserWarning: Database does not exist at path None warnings.warn( /beegfs/home/syl/anaconda3/envs/vs2/lib/python3.10/site-packages/mag_annotator/database_handler.py:123: UserWarning: Database does not...
when I run this command `magpurify clean-bin ./metabat_bin_last/${line} ./magpurify_out ./magpurify_out_fna/${line}.fna`,i I encountered this problem: ``` Reading flagged contigs phylo-markers: no output file found clade-markers: no output file found conspecific: no...
When I ran the test data, I met this problem, command line: `nohup ./argoap_pipeline_stageone_version2.3 -i example/inputfqs -o testoutdir -m example/meta-data.txt -n 8` error: ``` testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 4: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamondv0.9.24: Permission denied...
Hi, When I used plspm to build a model for the microbiome, I met this problem， ``` Error in if (w_dif < specs$tol || iter == specs$maxiter) break : missing...
* pharokka version: 1.7.3 * Python version: 3.10 * Operating System: Linux ### Description I ran the command as below `pharokka.py -i 5_redundant/${line} -o 6_pharokka/${sample} -t 1 -f -d /beegfs/home/syl/database_db/pharokka`...
I also met this problem, when I ran this comman, `modkit pileup --ref /mnt/raid/syl/5mc/05_20250122/5_remora/4_remora_inference/4mer.fasta --cpg --ignore h --combine-strands 4mer.infer.sort.bam 4mer.infer.bed ` ``` > fetching sequence failed, FASTA read interval was...