Simon Wiedemann

Hello and thanks for opening this issue! The reason for the error is the way you specified the `--unet-params-dict` and `--adam-params-dict` arguments. They should be specified as ``` --unet-params-dict "{'chans':...

Hi Misha, glad to hear that using the config file method has solved your issue! The error you describe reminds me of a bug in an earlier version version of...

Closing due to inactivity. Feel free to re-open the issue If necessary.

Hello Philippe and Ricardo, thanks for opening this issue! The error you describe sounds like something is wrong with reading and/or writing the model input and target subtoms as mrc...

Hi Philippe, thank you for sharing the full error messages. The problem is indeed related to reading and writing the headers of the subtomogram mrc files. For that DDW uses...

Hi Philippe and Ricardo, just a quick heads up: After thinking about this issue for a while, I think that the cleanest solution would be to save the subtomograms as...

Dear Philippe, I have just pushed the version with the `.pt` subtomos to a new branch called `torch_subtomos`. You can test this version by switching to the `torch_subtomos` branch and...

> My suspicion is some thermal fluctuation on the GPUs generates weird numbers (like NaN or None) in the subtomograms during fitting, which ultimately causes the MRC header calculation to...

Thanks for sharing @RHennellJames! The fact that you get the same error suggests that the issue does not only occur for a certain hardware setup, which is good to know....

Thanks for testing the fix @rdrighetto! > However, in a comparison with the vanilla code based on MRC subtomograms with identical settings, including the same random seed and running on...