Simon Wiedemann
Simon Wiedemann
Closing this due to inactivity. Feel free to re-open the issue if necessary 😊
Dear @Kathir-66, sorry for my late reply! The warning you are describing is probably not from DeepDeWedge itself but comes from somewhere else in your system (maybe SLURM). Can you...
Closing this due to inactivity. Feel free to re-open the issue if necessary 😊
Hi @khayatlab, thanks for using DeepDeWedge and for reaching out! > Do you have any suggestions for the pixel size range that is needed? The manuscript bins the aligned series...
Hi Reza, >Normalizing the tomogram prior to processing with DeepDeWedge fixed the problem. Glad I could help! 🙂 >However, some tomograms become smeared out after denoising. How does the program...
Oh no! ☹ Thanks for trying the suggestions though! Maybe some properties of the second tomogram that are unknown to us somehow prevent proper model fitting. Do the fitting and...
To fit a single model on multiple tomograms, you can specify a list of tomos for `tomo0_files` and `tomo1_files` in your `.yaml` config file. E.g. ``` tomo0_files: - "PATH_1_0" -...
Hi @khayatlab, I recently ran into an issue that reminded me of your problem with the smeared-out densities. In my case, the tomogram contained large empty regions in the z-axis,...
Ok, thanks for letting me know! Sorry that I was unable to help you :(
Judging from the error message `TypeError: 'NoneType' object does not support item assignment` upon `hparams[hparam] value`, it seems like `hparams` is `None`, which could be due to a corrupt hyper-parameter...