Shanshan He

Error when saving Seurat to H5Seurat file with latest Seurat Version

4

Dear team, Hi, first of all thank for you great work! I faced an error once I want to save my seurat object to Anndata with the latest Seurat Version...

Support for Large Sparse Matrices in Signac

1

Hi Signac Team, I hope you’re doing well! I’m currently working on a project where the number of peaks in the matrix exceeds the matrix size limitation (2^31-1). To address...

Should sdY = 1 be used for GTEx eQTL data in coloc?

3

Hi Chris, I would like to double-check the recommended practice for setting sdY when using GTEx eQTL summary statistics with coloc::coloc.abf(). I saw in previous issues that you mentioned it...

scDRS fails with categorical covariate

8

Hi, First of all, thanks for developing this wonderful tool! I'm running scDRS on a large single-cell atlas and had an error when using a categorical covariate provided as string...