Shanshan He

icon location PhD student in Bioinformatic at University of Copenhagen

Results 5 comments of Shanshan He

Error in saveh5seurat after upgrading to Seurat v5

Me too. With the same error

Error when saving H5Seurat

I tried the solution in #26 and it succeed. I think that could be the problem in 'reductions'. `srt@reductions$umap@misc

Error when saving H5Seurat

Once I update my Seurat to latest version, I got this error again. And I try to empty all my reductions layers but still useless. `Error in if (ncol(x =...

Warning in FindClusters: sparse->dense coercion: allocating vector of size 2.9 GiBWarning in paste(new, collapse = "\n") : NAs introduced by coercion to integer range

Same here

"logfc" parameter in findmarkergene(), log2 or log10?

I think it depends on which data you used as input. As the default/expected input here is normalized expression matrix(Seurat NormalizeData()), which is `xnorm