Giulio Benedetti
Giulio Benedetti
Hello! I am trying to disassemble a RootedTree object into its components and then reassemble it. However, I get a method error as follows: ``` # generate random tree nu...
Hi! iSEE provides a great interface to visualise the components of SummarizedExperiment as well as SingleCellExperiment instances. However, to the best of my knowledge iSEE does not yet target elements...
The current method for MultiAssayExperiments requires some manual work which the end user may not be familiar with. As in [this example](https://microbiome.github.io/OMA/multi-assay-analyses.html#mofa), after transforming assays you also need to: 1....
Hi! The current method for MultiAssayExperiments requires some manual work which the end user may not be familiar with. As in [this example](https://microbiome.github.io/OMA/multi-assay-analyses.html#mofa), after transforming assays you also need to:...
The [Exercise chapter](https://microbiome.github.io/OMA/exercises.html) has plenty of exercises. Let's add solutions to them as foldable code chunks, closed by default and opened when user clicks on them. It can be done...
Hi! Currently, the [visualisation chapter](https://microbiome.github.io/OMA/docs/devel/pages/19_visualization_techniques.html#heatmaps) shows heatmap examples with multiple packages (pheatmap, sechm and ggplot). These examples require a great deal of manual manipulation of the generated graphics to resize...
Hi! Currently, when performing ordination (PCoA), there is no straightforward way to retrieve the original features that contribute the most to the reduced dimensions. Every time, the user would need...
Hi! What do you think about removing the `na.action` argument from `runRDA` and instead providing instructions in OMA how users can filter missing values themselves? This could simplify the code...
Hi! This pull request aims to export .selectInputHidden so that it can be used in iSEEtree without importing it with `:::`. Please let me know if any other changes are...
Hi! Would it be possible to export .selectInputHidden? This way I wouldn't need to import it with ::: in iSEEtree. I can also make a PR if you like. Thanks!