Vitaly Voloshin
Vitaly Voloshin
Hello! I am trying to construct a graph using two very simple (artificial) sequences for testing purposes. I tried several different cases (two sequences cases each): 1) - A-B-C -...
Hello! As discussed in the other issue, I am trying to run SVision on minimap2 alignment of assembled sequence to reference genome. It uses artificial sequence with specially SV. Minimap2...
That is more of a feature request/clarification rather than a bug. So, I need to checkpoint a container that was started with the `apptainer run ...` command rather than the...
### Description of bug I have an error on Spades 3.15.5 downloaded and installed as Binary from here (GitHub Releases). It is the same issue as reported in #1267. Unfortunately,...
Hello! I received a file which is not sorted by sequence IDs, e.g. first there are lines of type `gene` for multiple `seqid`s and then multiple nRNA lines with the...
I am sorry for so many issues at the same time. I set up network mode through Fetch (net=browser). But when I try to do curl for a site that...
I am trying to run `genomic_converter` from VCF file to STRUCTURE format, but get a strange error that the default parameter of a radiator_parameter` function is not acceptable. Here is...
I installed ntfy with telegram backend: ``` pip install ntfy[telegram] ``` but when I do the first run, I get a strange errors: ``` ntfy -b telegram -v -l DEBUG...
I have a very simple example. I have a cropped spatialdata object [test.zarr.tar.gz](https://github.com/user-attachments/files/22806138/test.zarr.tar.gz) I am trying to plot shapes 'nucleus_boundaries' with colouring by 'ident_add' column from 'table'. But I get...