Paul Jonas Jost

Release 0.2.14

1

* Ensembles: * Save and load weights and sigmay (#876) * Define relative cutoff (#855) * PEtab: * Pass problem kwargs via petab importer (#874) * Use `benchmark-models-petab` instead of...

Added Pymc v4 Sampler (on hold)

2

This is to be able to use Apsara in combination with pymc. For now only a draft. TODO: - [x] Import for pymc via GitHub probably until official version is...

Parameter Indices Ordering

1

Changed visualize.profiles in a way that if you supply a different ordering in your parameter indices, this ordering is retained in the visualization.

Feature simulation chunks

16

Added an option of chunk size to the relevant functions. Not outsourced as a function yet, if wanted would put it into a AmiciCalculator function. Also: I did not yet...

Roadrunner as simulator

1

Added functionality for RoadRunner simulations. Currently still dependent on PEtab (which might be removed at a later stage). Unifying PEtabImporter for amici, roadrunner and general scenarios will be put into...

Code checks not accurately reflects the quality of code

5

We are currently running only the pre-commit hook in the tests, i.e. only the changed files will be tested. In this case new updates on quality checks will only be...

Feature parpe to pypesto history

3

fixes #349