Onkar Mulay

OSError: libopenslide.so.0: cannot open shared object file: No such file or directory

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python3 -m stnet prepare spatial On running this command I have got this error, any idea how should I tackle this...?? File not found, where can I download it from?...

**Code** image1 = transform_img_fn([os.path.join('D:\\.....ut_files\\tiles\\block2\\img1.jpeg')]) explainer = lime_image.LimeImageExplainer() explanation = explainer.explain_instance(image1[0].astype("double"), model_predict, top_labels=2, num_samples=2500, batch_size=1, hide_color=0) dict_heatmap1 = dict(explanation.local_exp[explanation.top_labels[0]]) heatmap1 = np.vectorize(dict_heatmap1.get)(explanation.segments)  I wanted to know why is the colorbar...

UnboundLocalError: local variable 'gene_samples' referenced before assignment

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* spladder version: Latest * Python version: version compatible with latest spladder * Operating System: Ubuntu * new environment was made and spladder installed via conda ### Description This error...

* spladder version: The one previous to latest * Python version: compatible with spladder version * Operating System: Linux ### Description Running spladder in test mode. New version gives index...

Hi, Can you post an example for Bayes_Est.R like you have done for tetradrunner? Please! Thanks for the package 👍

graph$getAttribute('BIC') is null What to conclude from it?

Hi, Thanks for the amazing tool. In the data folder -> pathway.rda is provided, can you please provide the script or the steps how this was created? Thanks

Hi devlopers, thanks for the great tool. I have one question with the fundamentals of the model architecture. in TxGNN.py -> For finetuning, why is FullNegSampler used? because when you...

Issue in plotting cell labels by celltype colour for Xenium

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``` crop0(xenium_sdata).pl.render_labels(outline_alpha=0.4, fill_alpha=0, color="cell_type", contour_px= None, palette=colors, groups=groups).pl.show(coordinate_systems=["global"]) ```  Same command works for CosMx, but doesn't work for Xenium.