Moonriver1988

Hello, Thanks for your reply! When set to balancing in juicebox, the data cannot be displayed, but with other normalization method like coverage and coverage(sqrt) the data can be displayed,...

Hello, Thanks for your reply! I understand now. Thank you very much for your help!

the error "subscript out of bounds" in this package is often caused by chromosome name is inconsistent between files, i.e. "1" vs. "chr1"

Hello, Thanks for your reply! It doesn't work by directly adding "facet_null()" after visualise, it shows the following error: Error in `check_aesthetics()`: ! Aesthetics must be either length 1 or...

Thank you very much for your reply! I'm sorry to bothering you again. v4c$data has 3 columns, "chromosome", "mid", "sample_name", I tried using v4c$data to draw figure with ggplot2, but...

Thanks for your reply and thank you very much for your suggestion about using geom_col()! The ggplot figure do looks like visualise figure after remove viewpoint. I really appreciate you...

Hello, I encountered same error in "compartment_score" step, and I found the chromosome names are different between HiC matrix and bed file, "1" vs. "chr1". I think you can try...

Hi Gemma, I haven't solve this problem, I think probably is because the data is too sparse(https://github.com/aryeelab/hichipper/issues/16). The test dataset runs well, I got .mango file with test dataset. I...

I have encountered the same error, have you fixed it?

I tried the example data from GENOVA package, however, I got the same error. I think maybe the problem is some of the dependent package has updated so that it...