Max Gamill
Max Gamill
### Is your feature request related to a problem? Users currently require the better skeletonisation, pruning and tracing found within the `maxgamill-sheffield/cats` branch along with the height-traces Sylvia has made...
### Is your feature request related to a problem? Metadata such as the real lengths of an image are not currently saved in the Tiff files, this makes downstream analysis...
**Is your feature request related to a problem? Please describe.** AFM's produce 2 "images" for each channel, one is from a forward trace and the other the backward trace as...
**Is your feature request related to a problem? Please describe.** Users find it frustrating to look through each individual image folder to obtain the individual crops. This makes it easier...
**Describe the bug** Alternative to `.spm` files there are `.001` file formats too, and currently these are not analysed when using this branch. **To Reproduce** Run with any non-`.spm` AFM...
(branch: `maxgamill-sheffield/183-dnatracing-refactor`) This branch centres around refactoring `dnatracing.py` upto and including the disrodered_traces function. This means this PR centers around organising the skeletonisation code from tracingfuncs, removing the unused code,...
This PR splits out the dnatrace smoothing functions into the "splining.py" module to TopoStats which does the sole function of smoothing the disordered traces either as TopoStats normally does (average...
This is the second PR of the big 800-better-tracing-refactor which seperates and creates an additional "nodestats" step to run the crossing analyses and add extra grain statistics to the grainstats...
This is the first part of the mega PR to refactor the 800-better-tracing branch. This PR in particular does: - Creates a smoke test for me to check the refactored...
This PR adds the "ordered_tracing.py" module to TopoStats which does the sole function of ordering the disordered traces either as TopoStats normally does, or via NodeStats if requested / possible....