Max Gamill
Max Gamill
Closing as the versioned docs look back online :)
@ns-rse These lines aren't in the code anymore so is this ok to be closed? Doesn't seem like a duplicate as this is one specific cause of #366 whereas #366...
Skeletonisation and pruning added together with the nodestats tracing due to their intertwining and is on branch maxgamill-sheffield/800-better-tracing (linked in the development section). It currently runs to completion when testing...
> Get advice from experimentalists Happy with the state of what goes into the grainstats file and the .topostats files and it makes sense. Distinction between grain and molecule seems...
> Should U-net masking be included as part of this merger, or perhaps as a separate issue/PR? Great point! There are a few edits within the cats branch to improve...
Hey @ns-rse , **A1:** Yep just old code that I didn't have time to refactor, and I think it was designed similarly to the skeletonisation code which did the same...
Moving chats from #778 to here: ------- @derollins > I noticed while testing PR https://github.com/AFM-SPM/TopoStats/pull/777 that tif was not available as an option for saving images. Although this may be...
Renamed the issue more suitably to outputting metadata. From the meeting we want to put more metadata into the .topostats (hdf5) file with structure below: I suggest we make a...
I also think this might cause the "failed to skeletonise error" and dnatracing stats for these molecules to not be captured:
going to assume this has been fixed internally due to lack of response :)