Maria Heitmeier
Maria Heitmeier
One year later I have the same wish, this feature would really make the `plot.igraph` function so much more useful! Best, Maria
Hi :) I work with DataDeps in a jupyter notebook. I don't mind having to agree to download, but the problem is that in jupyter notebooks, print statements are often...
This might be due to a mistake in `GlycolysisLayout_small.sbml.xml`, since for many species in it, a warning is given, like for example: ``` ERROR (SBMLCoreParser.java:179) - "Glucose-6-phosphate" is not a...
The reason is that in `edu.ucsd.sbrg.escher.EscherConverter.parseEscherJson(EscherConverter.java:232)` `escherJson.get(0) = null` and `escherJson.get(1) = null`
I can't currently recreate this error.
Trying to solve this has lead to many more problems so I leave it this way for now. For anyone in the future working on this: the problem is in...
The compartment's information read out from the Escher file is indeed null: `c=EscherCompartment [x=null, y=null, width=null, height=null]`
There is no NullPointerException anymore now, but if all of the compartment's parameters are null, the compartment is simply drawn around the entire canvas. This might be improved.
This is probably the same issue as issue #46
Can confirm, the following usually throws an AssertionError: ``` from pydantic_ai.models.gemini import GeminiModel from pydantic_ai.providers.google_vertex import GoogleVertexProvider from pydantic_ai import Agent import asyncio model = GeminiModel('gemini-1.5-flash', provider=GoogleVertexProvider(project_id="YOUR_PROJECT_ID")) async def run_single_task(model):...