Lucas446

Hi, Is it correct to directly compare results from hicAggregateContacts function between several conditions (mutant vs wt) ? Knowing that the matrices are normalized and corrected. Thanks a lot, Best,...

Hi, Thank you so much for providing this program it is very useful ! I performed HiC experiment and process the sequencing raw data using Juicer (.hic) and Hicexplorer (.h5...

"IndexError: list index out of range" while using --pcatype fithic

11

Hi, I am running into an error while running dcHIC fithic step: ``` `Rscript /Users/tlucas/dcHiC/dchicf.r --file input.St10_St14.txt --pcatype fithic --dirovwt T --diffdir catSt10_vs_catSt14 --maxd 10e6 --fithicpath '/Users/tlucas/.pyenv/shims/fithic' --pythonpath '/Users/tlucas/.pyenv/shims/python3' Finding...

Get average interaction submatrices from pre established contact file

1

Hi, I would like to perform an PE-SCAn but not all-vs-all contact but rather from a bed file containing contacts (bedpe) (chr1 start1 end1 chr2 start2 end2), and I would...