Li ZD
Li ZD
I plot points with ggrepel and ggbreak, but the labels are not as we expected: the right break region has the duplicated labels as the left. 
I installed lastest IDR (2.0.3) with: `python3 setup.py install --/mnt/data0/lizhidan/software/idr-2.0.3` then, ran: `idr` got: ` File "/home/lizhidan/.local/bin/idr", line 4, in __import__('pkg_resources').run_script('idr==2.0.3', 'idr') File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3254, in def _initialize_master_working_set(): File...
Hi, I encountered a problem using as.cell_data_set from the latest version of seurat-wrappers. ```txt Error in slot(object = `*tmp*`, name = "preprocess_aux") : no slot of name "preprocess_aux" for this...
Can anyone tell me the difference between "gene_spectra_score.k_3.dt_0_1.txt" and "spectra.k_3.dt_0_1.consensus.txt"? Positive and negative values are allowed in "gene_spectra_score.k_3.dt_0_1.txt" with all genes, but only positive values are allowed in "spectra.k_3.dt_0_1.consensus.txt" with...
### What kind of feature would you like to request? Additional function parameters / changed functionality / changed defaults? ### Please describe your wishes It seems rank_genes_groups_dotplot doesn't support the...
Hi, I tend to annotate spatial data using single-cell datasets (10 libraries) with batches (Chemistry and donor) as a reference using the transfer label function. How can I process those...
Hi, I got negative values after run score_genes with log1P or counts layer like below: using layers['counts']:  using layers['counts']:  Is this reasonable?
I have 2 datasets, from human and mouse, to be integrated. There is a batch effect within each dataset. Could some one tell me how to use liger to integrate...
Hi, Interesting work for spatial data analysis! Can this tool work for stereo-seq with only expression matrix and spatial coordinates? thanks!