Li ZD
Li ZD
Hi, I would like to know how to assign a cell type to each spot. Would using the maximum value in tangram_ct_pred to determine the cell type for each spot...
> @LeonSong1995 Hi~ o(_￣▽￣_)ブ Firstly, CellChat uses real distances (measured by the International System of Units, such as μm & nm...) as distance constraints when calculating the probability of cell...
Thank you! I have a seurat object, and its meta has a column of "batch" representing the batch, which contains information of donor for human and sampling batch for mouse....
Thank you! Best!
Here is my conda env. ``` Package Version ---------------------------- ---------- absl-py 2.1.0 access 1.1.9 addict 2.4.0 adjustText 1.3.0 affine 2.4.0 aiohappyeyeballs 2.4.3 aiohttp 3.10.10 aiosignal 1.3.1 alphashape 1.3.1 anndata 0.10.9...
It doesn't work on my server's Desktop command line or jupyter.
For example, I want to get the adjusted coordinates for the left-right axis. How to do it?
Thank you!
Same issue. How to choose cell annotation? first_type or the max weight one?