LeilyR
LeilyR
issue #758 **Welcome to the HiCExplorer GitHub repository! Before opening the issue please check that the following requirements are met :** - [ ] Search whether this issue (or a...
Add try/exception [here](https://github.com/deeptools/HiCExplorer/blob/e917b3e5ae3d15d81b7f364f73c575a337de6a69/hicexplorer/hicCompartmentalization.py#L96) , just in case there is a chr in pca and does not exist on the obs/exp matrix.
- [x] bug in writing a cool matrix but giving it the h5 file ending. #377, #537 - [x] plotting modules doente work from inside a Jupiter notebook. #536 -...
It is slow when the numebr of bam files increases. (It could potentially be affected by the high depth of sequencing as well.)
I am interested in running a snakemake workflow fully in another wrokflow. If I understood the modularization correctly I can use github URL to call the pipeline into a second...
cosmetic changes in attempt to make the code structure clearer
Hi, Is it alright if I use one ctrl sample for all the replicates of an experiment? Having replicates makes sense if the IVT goes on the same flowcell as...
Hi, What are the width of regions on bootstrap plot? How the intervals are getting calculated? Also, Is there a way to do some statistic on the difference between 2...
Would be nice if the `gz` can be used as input, `txt` files can get so big. I have a matrix on fly which is 14G in txt as opposed...