Laura-Waechter

Reading in MERSCOPE sample data with squidpy.read.vizgen() doesn't work for every dataset?

9

Dear all, I tried to follow this workflow (https://squidpy.readthedocs.io/en/stable/external_tutorials/tutorial_vizgen_mouse_liver.html) for the Human Liver cancer dataset (https://info.vizgen.com/ffpe-showcase) instead. But when using squidpy.read.vizgen(), the obsm and var from the AnnData object are...

Tangram function cross_val uses deprecated alias function - can be updated?

1

Dear all, when I try to run the cross_val function, if get the following Error: AttributeError: module 'numpy' has no attribute 'float'. `np.float` was a deprecated alias for the builtin...