Laura-Waechter

Results 4 comments of Laura-Waechter

Reading 10x scRNA-seq with read_10x_mtx()

Hello, my issue is similar to the ones above, so I hope you can help me with that. I tried to read in some sample data from a liver cell...

Reading 10x scRNA-seq with read_10x_mtx()

All right, I will try that. Thanks

Reading in MERSCOPE sample data with squidpy.read.vizgen() doesn't work for every dataset?

Thanks for your fast reply @giovp . I now tried to install it the way you suggested, but the matrix is still empty...

Reading in MERSCOPE sample data with squidpy.read.vizgen() doesn't work for every dataset?

I replaced the code of the function with this: coords = coords.astype("str") coords.index = coords.index.astype(adata.obs.index.dtype) but that still doesn't help