Laura-Alex

Hello, I am probably using megahit in a manner it wasn't designed for (on fasta sequences after previous sorting of metagenomic data by spacegraphcats. Also I'm using -r even though...

Running out of memory at the catlas building phase

7

Hello, I gave spacegraphcats another go, and tried to run bits of the code separately so I can understand where things go wrong. This time it's running out of memory...

Can GraphBin be used with a co-binning approach?

2

I've used MEGAHIT to assemble samples individually, and then ran vamb in order to bin them all together. I was wondering whether GraphBin can cope with / be used to...

First of all, thank you for maintaining and developing the program. It's very useful and easy to use. Secondly, I have an issue. I have a dataset of ~70 proteomes....

ncbi-genome-download works with refseq for me, but not genbank

1

This might be the same issue as #224 . I am trying to download a couple of prokaryotic genomes. Some are in Refseq and Genbank, others only in the latter....